TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 5UIJ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5UIJ_TYD_B_401 | 88% | 38% | 0.085 | 0.962 | 0.72 | 1.74 | - | 4 | 1 | 0 | 100% | 1 |
| 5UIJ_TYD_B_402 | 88% | 41% | 0.081 | 0.955 | 0.76 | 1.59 | - | 3 | 0 | 0 | 100% | 1 |
| 5UIJ_TYD_A_401 | 81% | 39% | 0.1 | 0.952 | 0.67 | 1.78 | - | 6 | 1 | 0 | 100% | 1 |
| 5UIJ_TYD_A_402 | 69% | 30% | 0.113 | 0.929 | 0.76 | 2.12 | - | 7 | 0 | 0 | 100% | 1 |
| 5UIM_TYD_B_403 | 72% | 30% | 0.119 | 0.944 | 1.03 | 1.85 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5UIN_TYD_B_402 | 58% | 27% | 0.128 | 0.906 | 0.96 | 2.11 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 99% | 25% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 99% | 34% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 35% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 98% | 34% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_C_3006 | 98% | 9% | 0.057 | 0.978 | 1.68 | 2.93 | 5 | 3 | 0 | 0 | 100% | 1 |
