NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE
NAD is a Ligand Of Interest in 5JYD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5JYD_NAD_D_901 | 97% | 60% | 0.06 | 0.978 | 0.67 | 0.82 | 1 | 1 | 0 | 0 | 100% | 1 |
5JYD_NAD_C_901 | 96% | 60% | 0.065 | 0.974 | 0.7 | 0.79 | - | - | 0 | 0 | 100% | 1 |
5JYD_NAD_E_901 | 82% | 64% | 0.1 | 0.955 | 0.64 | 0.7 | - | 1 | 0 | 0 | 100% | 1 |
5JYD_NAD_G_901 | 81% | 65% | 0.101 | 0.952 | 0.59 | 0.72 | - | 1 | 0 | 0 | 100% | 1 |
5JYD_NAD_B_901 | 77% | 65% | 0.106 | 0.947 | 0.61 | 0.72 | - | 1 | 0 | 0 | 100% | 1 |
5JYD_NAD_H_901 | 72% | 66% | 0.112 | 0.937 | 0.54 | 0.75 | - | 1 | 0 | 0 | 100% | 1 |
5JYD_NAD_A_901 | 62% | 62% | 0.135 | 0.927 | 0.68 | 0.74 | - | 3 | 0 | 0 | 100% | 1 |
5JYD_NAD_F_901 | 51% | 67% | 0.147 | 0.901 | 0.57 | 0.68 | - | 1 | 0 | 0 | 100% | 1 |
4URF_NAD_A_1249 | 100% | 45% | 0.034 | 0.995 | 0.96 | 1.2 | 2 | 4 | 0 | 0 | 100% | 1 |
2C5A_NAD_B_1374 | 100% | 25% | 0.039 | 0.992 | 1.34 | 1.84 | 6 | 7 | 1 | 0 | 100% | 1 |
1HET_NAD_A_402 | 100% | 11% | 0.043 | 0.994 | 2.25 | 2.1 | 9 | 8 | 0 | 0 | 100% | 0.9068 |
2JHF_NAD_B_403 | 100% | 18% | 0.04 | 0.99 | 2.08 | 1.62 | 11 | 5 | 2 | 0 | 100% | 1 |
1HEU_NAD_B_402 | 100% | 8% | 0.043 | 0.993 | 2.5 | 2.41 | 13 | 11 | 0 | 0 | 100% | 0.8886 |