UDP: URIDINE-5'-DIPHOSPHATE

UDP is a Ligand Of Interest in 4U8O designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4U8O_UDP_B_602 75% 16% 0.126 0.962.05 1.63 9 820100%0.91
4U8O_UDP_B_609 40% 10% 0.163 0.9042.05 2.2 8 110084%0.7056
4U8O_UDP_A_602 39% 17% 0.2 0.9051.95 1.66 8 850100%0.85
4U8O_UDP_A_609 30% 15% 0.187 0.8511.92 1.85 8 1100100%0.78
4U8O_UDP_C_609 17% 9% 0.218 0.8712.42 2.1 8 50060%0.504
4U8O_UDP_D_609 12% 9% 0.259 0.8642.49 2.02 8 50060%0.522
3UTG_UDP_A_515 88% 20% 0.113 0.9881.86 1.56 8 700100%0.9
4U8N_UDP_B_602 84% 19% 0.124 0.9851.85 1.59 8 900100%1
3UKL_UDP_E_800 76% 37% 0.124 0.9620.94 1.53 1 610100%1
4WX1_UDP_B_602 67% 18% 0.139 0.9481.99 1.59 9 710100%0.85
5HHF_UDP_A_604 65% 6% 0.161 0.9653.59 1.62 16 940100%1
4PHR_UDP_A_301 100% 42% 0.042 0.9890.84 1.41 - 400100%1
2B69_UDP_A_900 100% 46% 0.046 0.9921.19 0.9 2 100100%1
1GX4_UDP_A_401 100% 32% 0.046 0.9911.68 1.03 2 300100%1
3U2V_UDP_B_270 99% 33% 0.049 0.9891.12 1.52 2 600100%1
5GY7_UDP_A_401 99% 40% 0.049 0.9891.09 1.23 1 300100%1