UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4D11 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4D11_UDP_A_1572 | 67% | 25% | 0.159 | 0.969 | 1.29 | 1.88 | 3 | 9 | 0 | 0 | 100% | 1 |
| 4D11_UDP_E_1572 | 62% | 25% | 0.166 | 0.961 | 1.33 | 1.89 | 2 | 6 | 1 | 0 | 100% | 1 |
| 4D11_UDP_B_1573 | 57% | 27% | 0.164 | 0.942 | 1.24 | 1.86 | 2 | 7 | 0 | 0 | 100% | 1 |
| 4D11_UDP_F_1364 | 55% | 29% | 0.164 | 0.935 | 1.22 | 1.74 | 2 | 6 | 0 | 0 | 100% | 1 |
| 4D11_UDP_C_1571 | 46% | 27% | 0.184 | 0.922 | 1.23 | 1.82 | 2 | 7 | 0 | 0 | 100% | 1 |
| 4D11_UDP_D_1571 | 40% | 26% | 0.207 | 0.92 | 1.3 | 1.83 | 1 | 7 | 0 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_B_401 | 100% | 30% | 0.047 | 0.992 | 1.85 | 1.09 | 3 | 4 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
