API: 2,6-DIAMINOPIMELIC ACID
API is a Ligand Of Interest in 3TD4 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3TD4_API_B_401 | 77% | 34% | 0.116 | 0.955 | 1.29 | 1.43 | 2 | 2 | 1 | 0 | 100% | 1 |
| 3TD4_API_D_401 | 72% | 44% | 0.123 | 0.946 | 0.91 | 1.28 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3TD4_API_A_401 | 69% | 33% | 0.12 | 0.934 | 1.24 | 1.52 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3TD4_API_H_401 | 67% | 10% | 0.116 | 0.926 | 1.32 | 3.09 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3TD4_API_F_401 | 66% | 25% | 0.128 | 0.934 | 1.37 | 1.81 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3TD4_API_E_401 | 65% | 31% | 0.138 | 0.942 | 1.21 | 1.64 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3TD4_API_G_401 | 63% | 11% | 0.143 | 0.939 | 1.57 | 2.78 | 2 | 2 | 0 | 0 | 100% | 1 |
| 3TD4_API_C_401 | 62% | 30% | 0.137 | 0.931 | 1.13 | 1.79 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4G88_API_A_401 | 89% | 31% | 0.082 | 0.96 | 1.42 | 1.44 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2DAP_API_A_902 | 99% | 8% | 0.052 | 0.983 | 2.2 | 2.59 | 6 | 6 | 1 | 0 | 100% | 1 |
| 5M47_API_A_301 | 83% | 33% | 0.118 | 0.977 | 1.01 | 1.72 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5LKW_API_A_201 | 69% | 31% | 0.099 | 0.969 | 0.68 | 2.15 | - | 4 | 1 | 0 | 69% | 0.6923 |
| 4Q6Q_API_A_505 | 68% | 42% | 0.122 | 0.933 | 1.04 | 1.27 | - | 1 | 1 | 0 | 100% | 1 |
