CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
CAP is a Ligand Of Interest in 2VDH designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2VDH_CAP_F_1477 | 98% | 52% | 0.064 | 0.985 | 0.92 | 0.94 | 1 | - | 0 | 0 | 100% | 1 |
2VDH_CAP_C_1477 | 97% | 56% | 0.067 | 0.982 | 0.81 | 0.87 | - | - | 0 | 0 | 100% | 1 |
2VDH_CAP_H_1477 | 96% | 55% | 0.073 | 0.983 | 0.97 | 0.76 | - | - | 0 | 0 | 100% | 1 |
2VDH_CAP_G_1477 | 96% | 52% | 0.071 | 0.98 | 0.98 | 0.88 | - | - | 0 | 0 | 100% | 1 |
2VDH_CAP_E_1477 | 96% | 56% | 0.072 | 0.981 | 0.86 | 0.81 | - | - | 0 | 0 | 100% | 1 |
2VDH_CAP_B_1477 | 95% | 52% | 0.079 | 0.985 | 1.06 | 0.82 | 1 | - | 0 | 0 | 100% | 1 |
2VDH_CAP_D_1477 | 95% | 55% | 0.075 | 0.978 | 0.89 | 0.86 | - | - | 0 | 0 | 100% | 1 |
2VDH_CAP_A_1477 | 92% | 55% | 0.085 | 0.978 | 0.92 | 0.8 | - | - | 0 | 0 | 100% | 1 |
5IU0_CAP_A_502 | 100% | 55% | 0.041 | 0.996 | 0.93 | 0.82 | - | - | 0 | 0 | 100% | 1 |
5MZ2_CAP_A_902 | 100% | 58% | 0.04 | 0.995 | 0.75 | 0.86 | - | - | 0 | 0 | 100% | 1 |
1WDD_CAP_E_2001 | 100% | 51% | 0.039 | 0.99 | 0.88 | 1.02 | - | 1 | 0 | 0 | 100% | 1 |
8BDB_CAP_O_502 | 100% | 55% | 0.045 | 0.989 | 0.78 | 0.94 | - | - | 0 | 0 | 100% | 1 |
2V6A_CAP_B_1477 | 100% | 54% | 0.048 | 0.99 | 0.94 | 0.85 | - | - | 0 | 0 | 100% | 1 |