PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 2DYR designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2DYR_PGV_N_1266 | 84% | 56% | 0.108 | 0.971 | 0.92 | 0.77 | 2 | 3 | 1 | 0 | 100% | 1 |
| 2DYR_PGV_C_267 | 84% | 56% | 0.105 | 0.966 | 0.82 | 0.84 | 1 | 2 | 4 | 0 | 100% | 1 |
| 2DYR_PGV_A_525 | 84% | 57% | 0.11 | 0.971 | 0.88 | 0.74 | 2 | 2 | 1 | 0 | 100% | 1 |
| 2DYR_PGV_P_1267 | 77% | 57% | 0.12 | 0.959 | 0.84 | 0.82 | 1 | 1 | 3 | 0 | 100% | 1 |
| 2DYR_PGV_Z_1524 | 10% | 50% | 0.266 | 0.775 | 1.04 | 0.9 | 3 | 1 | 3 | 0 | 100% | 1 |
| 2DYR_PGV_A_524 | 8% | 49% | 0.264 | 0.744 | 1.07 | 0.93 | 3 | 2 | 5 | 0 | 100% | 1 |
| 2DYR_PGV_P_1268 | 3% | 47% | 0.372 | 0.686 | 1.25 | 0.83 | 4 | 1 | 3 | 0 | 100% | 1 |
| 2DYR_PGV_C_268 | 2% | 48% | 0.388 | 0.622 | 1.22 | 0.81 | 3 | 1 | 1 | 0 | 100% | 1 |
| 5B1A_PGV_P_303 | 98% | 36% | 0.064 | 0.985 | 1.06 | 1.51 | 3 | 13 | 4 | 0 | 100% | 1 |
| 5X1B_PGV_C_302 | 95% | 52% | 0.078 | 0.981 | 0.92 | 0.93 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5B1B_PGV_C_302 | 94% | 56% | 0.078 | 0.979 | 0.81 | 0.87 | 1 | 1 | 3 | 0 | 100% | 1 |
| 7YPY_PGV_P_302 | 94% | 54% | 0.079 | 0.978 | 0.79 | 0.99 | 2 | 2 | 1 | 0 | 100% | 1 |
| 7COH_PGV_C_267 | 93% | 49% | 0.087 | 0.983 | 0.87 | 1.09 | 3 | 3 | 0 | 0 | 100% | 1 |
| 5ZCQ_PGV_N_608 | 90% | 34% | 0.094 | 0.978 | 1.15 | 1.53 | 5 | 8 | 1 | 0 | 100% | 1 |
