X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.15M K bromide, 30% w/v PEG 2000 MME
Crystal Properties
Matthews coefficientSolvent content
2.1743.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.4α = 90
b = 87.418β = 99.274
c = 111.214γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2021-09-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-11.18075CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.746.52399.80.07214.86.683684
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.730.798

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.746.52383653425499.7980.2030.20070.247227.626
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.443-1.388-0.7830.754
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.918
r_dihedral_angle_4_deg18.365
r_dihedral_angle_3_deg14.212
r_dihedral_angle_1_deg7.406
r_lrange_it5.265
r_lrange_other5.101
r_scangle_it3.287
r_scangle_other3.287
r_mcangle_it2.563
r_mcangle_other2.563
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.918
r_dihedral_angle_4_deg18.365
r_dihedral_angle_3_deg14.212
r_dihedral_angle_1_deg7.406
r_lrange_it5.265
r_lrange_other5.101
r_scangle_it3.287
r_scangle_other3.287
r_mcangle_it2.563
r_mcangle_other2.563
r_scbond_it2.063
r_scbond_other2.063
r_mcbond_it1.632
r_mcbond_other1.63
r_angle_refined_deg1.33
r_angle_other_deg1.228
r_symmetry_nbd_refined0.349
r_nbd_other0.283
r_metal_ion_refined0.239
r_nbd_refined0.231
r_symmetry_nbd_other0.186
r_xyhbond_nbd_refined0.156
r_nbtor_refined0.155
r_symmetry_xyhbond_nbd_refined0.141
r_symmetry_nbtor_other0.071
r_chiral_restr0.056
r_symmetry_xyhbond_nbd_other0.02
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6196
Nucleic Acid Atoms
Solvent Atoms792
Heterogen Atoms45

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing