8X5L

The Crystal Structure of PRKACA from Biortus.

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	0.2M NaAC, 0.1M Na3citrate pH5.5, 10% PEG 4000, 40% v/v Polypropylene glycol P 400

Crystal Properties
Matthews coefficient	Solvent content
2.61	52.93

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.272	α = 90
b = 77.272	β = 90
c = 142.698	γ = 90

Symmetry
Space Group	P 43

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2023-07-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08ID-1	0.97951	CLSI	08ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.75	47.57	100	0.999	16.4	11.7		21778

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.75	2.9			0.821

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.75	43.418	21741	1132	99.972	0.204	0.2009	0.2545	71.871

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.965			0.965		-1.93

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.527
r_dihedral_angle_6_deg	14.06
r_lrange_it	6.784
r_lrange_other	6.783
r_dihedral_angle_1_deg	6.324
r_dihedral_angle_2_deg	4.778
r_mcangle_it	4.181
r_mcangle_other	4.181
r_scangle_it	3.93
r_scangle_other	3.929
r_mcbond_it	2.475
r_mcbond_other	2.475
r_scbond_it	2.297
r_scbond_other	2.297
r_angle_refined_deg	0.947
r_angle_other_deg	0.328
r_symmetry_xyhbond_nbd_refined	0.25
r_nbd_refined	0.199
r_symmetry_nbd_other	0.186
r_nbtor_refined	0.183
r_nbd_other	0.137
r_xyhbond_nbd_refined	0.136
r_symmetry_nbd_refined	0.13
r_ncsr_local_group_1	0.102
r_symmetry_nbtor_other	0.076
r_chiral_restr	0.048
r_metal_ion_refined	0.033
r_xyhbond_nbd_other	0.012
r_gen_planes_refined	0.004
r_bond_refined_d	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5266
Nucleic Acid Atoms
Solvent Atoms	26
Heterogen Atoms	45

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing