8WT5

Vaccinia Virus J5 ectodomain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
23D 1H-13C NOESY0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
33D 1H-15N NOESY0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
43D HBHA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
53D CBCA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
63D HNCA0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
73D HN(CO)CA0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
83D HCCH-COSY0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
93D HCCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
103D HN(COCA)CB0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
113D HNCO0.5 mM [U-100% 13C; U-100% 15N] Vaccinia Virus Protein J5, 137 mM no label sodium chloride, 2.7 mM no label potassium chloride, 10 mM no label disodium phosphate, 1.8 mM no label potassium dihydrogen phosphate90% H2O/10% D2O8.1 mM6.51 atm298Bruker BRUKER AVANCE III 600 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerBRUKER AVANCE III 600600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCARA1.8.4Keller and Wuthrich
2processingTopSpin4.3.0Bruker Biospin
3collectionTopSpin4.3.0Bruker Biospin
4structure calculationX-PLOR NIH3.7Schwieters, Kuszewski, Tjandra and Clore
5refinementX-PLOR NIH3.7Schwieters, Kuszewski, Tjandra and Clore
6refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
7peak pickingCARA1.8.4Keller and Wuthrich