8WGF

The Crystal Structure of JNK3 from Biortus.

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	16% PEG MME (average Mr=550), 10% ethylene glycol, 20mM beta-mercaptoethanol, 100mM HEPES (pH7.3)

Crystal Properties
Matthews coefficient	Solvent content
2.3	46.53

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 50.956	α = 90
b = 71.003	β = 90
c = 106.966	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-09-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08B1-1	1.1806	CLSI	08B1-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.85	46	100	0.039	25.7	6.4		33935

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.85	1.89			0.776

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.85	38.638	33843	1645	99.847	0.212	0.2096	0.2663	43.429

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
5.522			-2.454		-3.068

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.812
r_dihedral_angle_4_deg	19.415
r_dihedral_angle_3_deg	15.369
r_lrange_other	9.076
r_lrange_it	9.064
r_dihedral_angle_1_deg	7.603
r_scangle_it	6.168
r_scangle_other	6.167
r_mcangle_it	5.396
r_mcangle_other	5.395
r_scbond_it	4.264
r_scbond_other	4.264
r_mcbond_other	3.735
r_mcbond_it	3.734
r_angle_refined_deg	1.584
r_angle_other_deg	1.262
r_nbd_other	0.226
r_nbd_refined	0.212
r_xyhbond_nbd_refined	0.196
r_symmetry_nbd_other	0.188
r_nbtor_refined	0.17
r_symmetry_xyhbond_nbd_refined	0.142
r_chiral_restr_other	0.123
r_symmetry_nbd_refined	0.111
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.074
r_symmetry_xyhbond_nbd_other	0.023
r_bond_refined_d	0.009
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2802
Nucleic Acid Atoms
Solvent Atoms	208
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing