8POF

The crystal structure of RsSymEG1 reveals a unique form of smaller GH7 endoglucanases alongside GH7 cellobiohydrolases in protist symbionts of termites


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.03 M Sodium fluoride, 0.03 M Sodium bromide, 0.03 M Sodium iodide, 12% v/v PEG 500 MME, 6 % w/v PEG 20000, 0.1 M Tris-Bicine pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.4249.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.604α = 90
b = 114.604β = 90
c = 49.963γ = 90
Symmetry
Space GroupI 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16MKB mirrors2021-05-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.9763MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8545.899.80.9969.84.227804
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.890.8212.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.8545.827793140599.7310.1670.16590.186620.646
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.228-0.2280.457
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.246
r_dihedral_angle_4_deg15.06
r_dihedral_angle_3_deg12.173
r_dihedral_angle_1_deg7.218
r_lrange_it3.62
r_lrange_other3.508
r_angle_other_deg2.404
r_scangle_it2.206
r_scangle_other2.205
r_mcangle_other1.481
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.246
r_dihedral_angle_4_deg15.06
r_dihedral_angle_3_deg12.173
r_dihedral_angle_1_deg7.218
r_lrange_it3.62
r_lrange_other3.508
r_angle_other_deg2.404
r_scangle_it2.206
r_scangle_other2.205
r_mcangle_other1.481
r_mcangle_it1.48
r_scbond_it1.37
r_scbond_other1.37
r_angle_refined_deg1.226
r_mcbond_it0.926
r_mcbond_other0.924
r_symmetry_nbd_other0.209
r_nbd_refined0.189
r_nbd_other0.188
r_symmetry_nbd_refined0.171
r_symmetry_xyhbond_nbd_refined0.152
r_nbtor_refined0.149
r_metal_ion_refined0.127
r_xyhbond_nbd_refined0.104
r_symmetry_nbtor_other0.067
r_chiral_restr0.05
r_bond_other_d0.037
r_symmetry_xyhbond_nbd_other0.008
r_gen_planes_other0.006
r_gen_planes_refined0.005
r_bond_refined_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2377
Nucleic Acid Atoms
Solvent Atoms203
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing