8IF4

Structure of human alpha-2/delta-1 without mirogabalin


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined40.107
r_long_range_B_other40.107
r_mcangle_it23.084
r_mcangle_other23.082
r_scangle_other20.555
r_dihedral_angle_3_deg16.063
r_mcbond_it13.814
r_mcbond_other13.797
r_scbond_it11.767
r_scbond_other11.765
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined40.107
r_long_range_B_other40.107
r_mcangle_it23.084
r_mcangle_other23.082
r_scangle_other20.555
r_dihedral_angle_3_deg16.063
r_mcbond_it13.814
r_mcbond_other13.797
r_scbond_it11.767
r_scbond_other11.765
r_dihedral_angle_1_deg5.56
r_dihedral_angle_2_deg4.964
r_angle_refined_deg1.218
r_angle_other_deg0.69
r_chiral_restr0.053
r_bond_refined_d0.006
r_gen_planes_other0.003
r_bond_other_d0.002
r_gen_planes_refined0.002
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Voltage-dependent calcium channel subunit alpha-2/delta-1
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles331613
Reported Resolution (Å)3.23
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)68.3
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelJEOL CRYO ARM 300
Minimum Defocus (nm)500
Maximum Defocus (nm)2500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL REFINEMENTCoot
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCCP4 package
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION