8I45

Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D NOESY	0.45 mM RNA-G-3GC-uucg, 0.675 mM KG022	95% H2O/5% D2O	50 mM	6.5	1 atm	288	Bruker AVANCE NEO 600
2	2D 1H-1H TOCSY	0.45 mM RNA-G-3GC-uucg, 0.675 mM KG022	95% H2O/5% D2O	50 mM	6.5	1 atm	288	Bruker AVANCE NEO 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	600

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	11
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
3	chemical shift assignment	Sparky	3	Goddard
5	structure calculation	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
4	peak picking	Sparky	3	Goddard

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.