X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2894% v/v MPD, 0.1 M Citric acid pH 3.5, 20% PEG 1500
Crystal Properties
Matthews coefficientSolvent content
2.8356.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 204.77α = 90
b = 100.62β = 108.17
c = 106.67γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELBruker PHOTON II2022-08-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEBRUKER D8 QUEST1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6647.11990.0997.22.958618
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.662.730.501

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.6647.1155652296598.980.214560.212050.26217RANDOM35.109
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.870.280.31-3.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.881
r_dihedral_angle_4_deg15.777
r_dihedral_angle_3_deg15.277
r_dihedral_angle_1_deg6.55
r_long_range_B_refined5.725
r_long_range_B_other5.687
r_mcangle_it3.097
r_mcangle_other3.097
r_scangle_other3.002
r_mcbond_it1.828
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.881
r_dihedral_angle_4_deg15.777
r_dihedral_angle_3_deg15.277
r_dihedral_angle_1_deg6.55
r_long_range_B_refined5.725
r_long_range_B_other5.687
r_mcangle_it3.097
r_mcangle_other3.097
r_scangle_other3.002
r_mcbond_it1.828
r_mcbond_other1.828
r_scbond_it1.82
r_scbond_other1.82
r_angle_refined_deg1.307
r_angle_other_deg0.785
r_chiral_restr0.072
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12914
Nucleic Acid Atoms
Solvent Atoms125
Heterogen Atoms184

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing