8HEZ

Structure of human SGLT2-MAP17 complex with Dapagliflozin


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.435
r_long_range_B_other20.144
r_long_range_B_refined20.143
r_dihedral_angle_4_deg18.281
r_dihedral_angle_3_deg15.829
r_scangle_other14.167
r_mcangle_it11.887
r_mcangle_other11.885
r_scbond_it9.773
r_scbond_other9.771
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.435
r_long_range_B_other20.144
r_long_range_B_refined20.143
r_dihedral_angle_4_deg18.281
r_dihedral_angle_3_deg15.829
r_scangle_other14.167
r_mcangle_it11.887
r_mcangle_other11.885
r_scbond_it9.773
r_scbond_other9.771
r_mcbond_it8.781
r_mcbond_other8.781
r_dihedral_angle_1_deg7.174
r_angle_refined_deg1.908
r_angle_other_deg1.432
r_chiral_restr0.093
r_bond_other_d0.029
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Binary complex of Sodium/glucose cotransporter 2 with PDZK1-interacting protein 1.
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles197695
Reported Resolution (Å)2.8
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)64
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)800
Maximum Defocus (nm)1600
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8.0267
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION