8F03

Thaumatin Anomalous Dataset at 293 K and 12 keV


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.62935 uL 24% potassium/sodium phosphate, 15% ethylene glycol, 0.1 M Bis-Tris, pH 6.6 + 5 uL 20mg/mL thaumatin in distilled water
Crystal Properties
Matthews coefficientSolvent content
2.9556.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.937α = 90
b = 58.937β = 90
c = 151.298γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293PIXELDECTRIS EIGER X 16M2020-01-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL14-11.0332SSRLBL14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3938.32399.80.0930.013129.752.45466027.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.391.4198.75.1810.7130.6861.352.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONSADFREE R-VALUE1.3938.32354505273799.7690.1130.11130.137422.772
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.1450.145-0.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.08
r_dihedral_angle_3_deg13.643
r_dihedral_angle_2_deg9.51
r_dihedral_angle_1_deg7
r_scbond_other5.716
r_scbond_it5.715
r_lrange_it5.362
r_scangle_it5.33
r_scangle_other5.33
r_rigid_bond_restr5.231
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.08
r_dihedral_angle_3_deg13.643
r_dihedral_angle_2_deg9.51
r_dihedral_angle_1_deg7
r_scbond_other5.716
r_scbond_it5.715
r_lrange_it5.362
r_scangle_it5.33
r_scangle_other5.33
r_rigid_bond_restr5.231
r_lrange_other4.552
r_mcangle_it2.8
r_mcangle_other2.8
r_mcbond_other2.539
r_mcbond_it2.536
r_angle_refined_deg1.618
r_angle_other_deg0.628
r_symmetry_xyhbond_nbd_refined0.377
r_xyhbond_nbd_refined0.324
r_nbd_refined0.249
r_symmetry_nbd_other0.216
r_nbtor_refined0.191
r_metal_ion_refined0.175
r_nbd_other0.154
r_symmetry_nbd_refined0.126
r_chiral_restr0.096
r_symmetry_nbtor_other0.09
r_bond_refined_d0.011
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1552
Nucleic Acid Atoms
Solvent Atoms157
Heterogen Atoms11

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
SHELXDEphasing