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Solution structure of Zipcode binding protein 1 (ZBP1) KH3(DD)KH4 domains in complex with N6-Methyladenosine containing RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC300 uM [U-100% 13C; U-100% 15N] sample 195% H2O/5% D2O0.026.5ambient atm310Bruker 950 Avance 950
22D 1H-13C HSQC300 uM [U-100% 13C; U-100% 15N] sample 195% H2O/5% D2O0.026.5ambient atm310Bruker 950 Avance 950
33D 1H-13C NOESY aliphatic300 uM [U-100% 13C; U-100% 15N] sample 195% H2O/5% D2O0.026.5ambient atm310Bruker 950 Avance 950
43D 1H-15N NOESY300 uM [U-100% 13C; U-100% 15N] sample 195% H2O/5% D2O0.026.5ambient atm310Bruker 950 Avance 950
52D 1H-1H NOESY300 uM [U-100% 13C; U-100% 15N] sample 195% H2O/5% D2O0.026.5ambient atm310Bruker 800 Avance 800
62D 1H-1H NOESY300 uM [U-100% 13C; U-100% 15N] sample 195% H2O/5% D2O0.026.5ambient atm310Bruker 700 Avance 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1Bruker950 Avance950
2Bruker800 Avance800
3Bruker700 Avance700
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number40
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementARIALinge, O'Donoghue and Nilges
2structure calculationARIALinge, O'Donoghue and Nilges
3chemical shift assignmentXEASYBartels et al.
4peak pickingXEASYBartels et al.