8CDX

Human carbonic anhydrase I complexed with 4-(3-ethylureido)benzenesulfonamide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29628-31% PEG4000, 0.2 M Sodium acetate, 0.1 M Tris pH 8.5-9.0
Crystal Properties
Matthews coefficientSolvent content
2.3247.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.27α = 90
b = 70.98β = 90
c = 121.58γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2021-06-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C0.9718ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3346.8599.90.2160.2250.99916.9312122663
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.331.3798.70.8392.348.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTNONE1.33546.85122659614499.8750.1430.14150.179418.352
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.230.723-0.493
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.241
r_dihedral_angle_4_deg18.542
r_dihedral_angle_3_deg13.192
r_dihedral_angle_1_deg7.194
r_rigid_bond_restr4.716
r_scangle_it4.401
r_scangle_other4.4
r_lrange_it4.076
r_lrange_other4.076
r_scbond_it3.995
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.241
r_dihedral_angle_4_deg18.542
r_dihedral_angle_3_deg13.192
r_dihedral_angle_1_deg7.194
r_rigid_bond_restr4.716
r_scangle_it4.401
r_scangle_other4.4
r_lrange_it4.076
r_lrange_other4.076
r_scbond_it3.995
r_scbond_other3.995
r_mcangle_other2.593
r_mcangle_it2.59
r_mcbond_it2.332
r_mcbond_other2.328
r_angle_refined_deg2.037
r_angle_other_deg1.589
r_nbd_refined0.216
r_nbd_other0.208
r_symmetry_nbd_other0.196
r_symmetry_nbd_refined0.191
r_nbtor_refined0.176
r_symmetry_xyhbond_nbd_refined0.157
r_xyhbond_nbd_refined0.129
r_chiral_restr0.12
r_symmetry_nbtor_other0.09
r_metal_ion_refined0.077
r_bond_refined_d0.017
r_gen_planes_refined0.013
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4032
Nucleic Acid Atoms
Solvent Atoms504
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing