8AH1

BK Polyomavirus VP1 mutant N-Q

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293.15	PEG 3.350 Lithium Chloride HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.23	44.96

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 60.462	α = 90
b = 155.959	β = 92.636
c = 141.322	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2021-04-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.006	50	94.81	0.994	8.35	6.6		164438

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.006	2.082			0.852

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4MJ1	2.006	48.784	164438	8246	94.538	0.183	0.18	0.232	28.332

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.554		-0.485	0.338		0.26

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.535
r_dihedral_angle_4_deg	22.145
r_dihedral_angle_3_deg	14.31
r_dihedral_angle_1_deg	7.982
r_lrange_it	5.35
r_lrange_other	5.34
r_scangle_it	4.195
r_scangle_other	4.195
r_mcangle_it	3.314
r_mcangle_other	3.314
r_scbond_it	2.915
r_scbond_other	2.915
r_mcbond_it	2.363
r_mcbond_other	2.362
r_angle_refined_deg	1.714
r_angle_other_deg	1.258
r_symmetry_xyhbond_nbd_refined	0.273
r_nbd_refined	0.2
r_symmetry_nbd_other	0.176
r_nbd_other	0.167
r_nbtor_refined	0.16
r_xyhbond_nbd_refined	0.144
r_symmetry_nbd_refined	0.128
r_symmetry_xyhbond_nbd_other	0.081
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.072
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	19642
Nucleic Acid Atoms
Solvent Atoms	1023
Heterogen Atoms	70

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
REFMAC	phasing
Coot	model building