8AGH

BK Polyomavirus VP1 mutant E73A

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293.15	PEG 3.350 Lithium Chloride HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.38	48.3

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 144.488	α = 90
b = 152.305	β = 90
c = 62.578	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2020-09-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.887	50	99.9	0.99	15.63	13.4		111193

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.887	1.935			0.69

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4MJ1	1.887	47.898	111193	5587	99.888	0.176	0.1745	0.2115	30.446

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.73			-0.532		-0.198

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.614
r_dihedral_angle_4_deg	23.263
r_dihedral_angle_3_deg	13.2
r_dihedral_angle_1_deg	7.686
r_lrange_it	5.686
r_lrange_other	5.668
r_scangle_it	4.423
r_scangle_other	4.422
r_mcangle_it	3.539
r_mcangle_other	3.538
r_scbond_it	3.092
r_scbond_other	3.092
r_mcbond_it	2.6
r_mcbond_other	2.599
r_angle_refined_deg	1.62
r_angle_other_deg	1.329
r_nbd_other	0.252
r_symmetry_nbd_refined	0.203
r_nbd_refined	0.2
r_symmetry_nbd_other	0.182
r_nbtor_refined	0.162
r_xyhbond_nbd_refined	0.156
r_symmetry_xyhbond_nbd_refined	0.106
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.072
r_symmetry_xyhbond_nbd_other	0.024
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9792
Nucleic Acid Atoms
Solvent Atoms	626
Heterogen Atoms	35

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
REFMAC	phasing
Coot	model building
XSCALE	data scaling