7Z4O

Influenza A/H7N9 polymerase core dimer with Pol II pSer5 CTD peptide mimic bound in site 2A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72770.1 M Tris pH 7.0, 13 % PEG 8K, 0.2 M MgCl2, 0.1 M guanidine hydrochloride
Crystal Properties
Matthews coefficientSolvent content
2.7154.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.474α = 90
b = 144.131β = 90
c = 336.197γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2016-07-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.97625ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.4149.21173.30.2830.3060.9957.714.137875
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.413.571.8731.9460.6961.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6TU53.41249.21137875185273.2250.2230.22010.272886.143
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.4041.569-1.166
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.57
r_dihedral_angle_3_deg16.81
r_dihedral_angle_4_deg14.756
r_lrange_it7.81
r_lrange_other7.81
r_dihedral_angle_1_deg5.498
r_mcangle_it4.88
r_mcangle_other4.88
r_scangle_it4.123
r_scangle_other4.123
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.57
r_dihedral_angle_3_deg16.81
r_dihedral_angle_4_deg14.756
r_lrange_it7.81
r_lrange_other7.81
r_dihedral_angle_1_deg5.498
r_mcangle_it4.88
r_mcangle_other4.88
r_scangle_it4.123
r_scangle_other4.123
r_mcbond_it2.811
r_mcbond_other2.81
r_scbond_it2.273
r_scbond_other2.273
r_angle_refined_deg1.207
r_angle_other_deg1.041
r_ext_dist_refined_d0.201
r_nbd_refined0.182
r_symmetry_nbd_other0.164
r_xyhbond_nbd_refined0.161
r_nbtor_refined0.156
r_nbd_other0.155
r_symmetry_nbtor_other0.074
r_ncsr_local_group_10.065
r_ncsr_local_group_30.05
r_chiral_restr0.047
r_ncsr_local_group_20.046
r_symmetry_nbd_refined0.037
r_ncsr_local_group_40.007
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms19381
Nucleic Acid Atoms524
Solvent Atoms
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing