X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.2M Potassium Formate, pH 7.3, 20% (w/v) PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.3246.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.2α = 90
b = 127.39β = 90.173
c = 104.76γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2021-04-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 5C (4A)1PAL/PLS5C (4A)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.129.36599.90.99710.76.7151387
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.140.712

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7YC02.129.365151386758199.8870.1950.19190.245136.435
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0150.0010.010.005
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.714
r_dihedral_angle_4_deg18.89
r_dihedral_angle_3_deg15.884
r_dihedral_angle_1_deg7.41
r_lrange_it5.732
r_lrange_other5.726
r_scangle_it4.584
r_scangle_other4.584
r_mcangle_other3.606
r_mcangle_it3.605
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.714
r_dihedral_angle_4_deg18.89
r_dihedral_angle_3_deg15.884
r_dihedral_angle_1_deg7.41
r_lrange_it5.732
r_lrange_other5.726
r_scangle_it4.584
r_scangle_other4.584
r_mcangle_other3.606
r_mcangle_it3.605
r_scbond_other3.051
r_scbond_it3.05
r_mcbond_it2.657
r_mcbond_other2.657
r_angle_refined_deg1.538
r_angle_other_deg1.281
r_nbd_other0.253
r_symmetry_nbd_refined0.242
r_nbd_refined0.199
r_symmetry_nbd_other0.178
r_nbtor_refined0.16
r_xyhbond_nbd_refined0.159
r_symmetry_xyhbond_nbd_refined0.147
r_symmetry_xyhbond_nbd_other0.097
r_symmetry_nbtor_other0.075
r_chiral_restr0.073
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20140
Nucleic Acid Atoms
Solvent Atoms577
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing