7WKF
Antimicrobial peptide-LaIT2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
2 | 2D NOESY | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
3 | 3D CBCA(CO)NH | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
4 | 3D 1H-15N NOESY | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
5 | 3D 1H-13C NOESY | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
6 | 3D HNCA | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
9 | 3D HNCACB | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
8 | 3D HCCH-TOCSY | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
7 | 3D 1H-15N TOCSY | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
13 | 3D C(CO)NH | 0.2 mM 13C LaIT2 | 95% H2O/5% D2O | 100 mM | 6.0 | 1.013 Pa | 298 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulaed annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | PONDEROSA | Woonghee Lee | |
2 | data analysis | MolProbity | Richardson | |
4 | data analysis | PROCHECK / PROCHECK-NMR | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton | |
3 | peak picking | Sparky | Goddard | |
5 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | chemical shift assignment | Sparky | Goddard |