7VU9

Pholiota squarrosa lectin (PhoSL) in complex with fucose(alpha1-6)[GlcNAc(beta1-4)]GlcNAc

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	293	4.3 M sodium formate (pH 7.0)

Crystal Properties
Matthews coefficient	Solvent content
2.98	58.69

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 126.739	α = 90
b = 127.057	β = 90
c = 39.418	γ = 90

Symmetry
Space Group	C 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	95	PIXEL	DECTRIS EIGER X 16M		2019-10-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-17A	1.0	Photon Factory	BL-17A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.154	44.87	99.5	0.087	0.996	9.18	3.5		17730

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.154	2.28	99.3		0.661	0.684	1.81	3.43

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6A86	2.154	44.865	17729	887	99.842	0.182	0.1788	0.2446	38.896

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.064			-0.041		-0.023

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	26.7
r_dihedral_angle_other_3_deg	26.075
r_dihedral_angle_1_deg	18.712
r_dihedral_angle_3_deg	16.832
r_lrange_other	7.943
r_lrange_it	7.923
r_scangle_it	6.243
r_scangle_other	6.242
r_mcangle_it	5.139
r_mcangle_other	5.138
r_scbond_other	4.208
r_scbond_it	4.206
r_mcbond_it	3.326
r_mcbond_other	3.324
r_angle_refined_deg	1.774
r_angle_other_deg	1.21
r_symmetry_xyhbond_nbd_refined	0.271
r_nbd_other	0.249
r_symmetry_nbd_refined	0.197
r_nbd_refined	0.192
r_symmetry_nbd_other	0.187
r_nbtor_refined	0.171
r_xyhbond_nbd_refined	0.153
r_symmetry_nbtor_other	0.083
r_chiral_restr	0.076
r_bond_refined_d	0.01
r_gen_planes_refined	0.007
r_bond_other_d	0.003
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1878
Nucleic Acid Atoms
Solvent Atoms	154
Heterogen Atoms	252

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing