7THX

Cryo-EM structure of W6 possum enterovirus


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.182
r_dihedral_angle_4_deg19.637
r_lrange_it16.13
r_lrange_other16.097
r_dihedral_angle_3_deg14.533
r_scangle_it10.295
r_scangle_other10.294
r_dihedral_angle_1_deg7.819
r_mcangle_other6.092
r_mcangle_it6.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.182
r_dihedral_angle_4_deg19.637
r_lrange_it16.13
r_lrange_other16.097
r_dihedral_angle_3_deg14.533
r_scangle_it10.295
r_scangle_other10.294
r_dihedral_angle_1_deg7.819
r_mcangle_other6.092
r_mcangle_it6.09
r_scbond_it6.01
r_scbond_other6.009
r_mcbond_it3.568
r_mcbond_other3.562
r_angle_refined_deg1.98
r_angle_other_deg1.349
r_nbd_refined0.165
r_symmetry_nbd_other0.164
r_nbtor_refined0.163
r_xyhbond_nbd_refined0.12
r_chiral_restr0.09
r_symmetry_nbtor_other0.082
r_metal_ion_refined0.048
r_bond_refined_d0.011
r_gen_planes_refined0.01
r_gen_planes_other0.002
r_bond_other_d
Sample
Enterovirus
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles9687
Reported Resolution (Å)2.96
Resolution MethodFSC 0.143 CUT-OFF
Other Detailsrelion 3.1
Refinement Type
Symmetry TypePOINT
Point SymmetryI
Map-Model Fitting and Refinement
Id1 (5OSN)
Refinement Space
Refinement ProtocolFLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)1.37
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)750
Maximum Defocus (nm)3000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
IMAGE ACQUISITIONSerialEM3.9
CTF CORRECTIONCTFFIND4.08
MODEL FITTINGUCSF Chimera
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTREFMAC
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION