7R7Q

Immature HIV-1 CACTD-SP1 lattice with Inositol hexakisphosphate (IP6)


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D CORD 50 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
22D CORD 100 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
32D NCACX 50 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
42D NCACX 50 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm263.15Bruker AVANCE III 850
53D NCOCX 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
62D CORD 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 600
72D CORD 50 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 600
82D NCACX 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 600
92D NCOCX 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 600
103D NCACX 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 600
112D NCACX 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm194.15Bruker AVANCE III 750
122D NCOCX 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm194.15Bruker AVANCE III 750
132D CORD 50 ms400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm268.15Bruker AVANCE III 850
142D HC CP HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
152D doubleREDOR HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
161D 31P direct polarization400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
171D 31P cross polarization400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
181D doubleREDOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
192D hNH HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6 S2Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
202D HC CP HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6 S2Protein buffer250 mM81 atm277.15Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III850
2BrukerAVANCE III600
3BrukerAVANCE III750
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number5
Representative Model1 (lowest energy)
Additional NMR Experimental Information
Detailsmagic angle spinning
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentNMRFAM-SPARKY3.115Lee, Tonellli, Markley
4chemical shift assignmentCcpNmr Analysis2.4CCPN
5data analysisNMRFAM-SPARKY3.115Lee, Tonellli and Markley
6structure calculationTALOS-NShen and Bax
7structure calculationX-PLOR NIH2.53Schwieters, Kuszewski, Tjandra and Clore
8refinementX-PLOR NIH2.53Schwieters, Kuszewski, Tjandra and Clore