7R7P

Immature HIV-1 CACTD-SP1 lattice with Bevirimat (BVM) and Inositol hexakisphosphate (IP6)


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D CORD 10 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 850
22D CORD 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 850
32D CORD 50 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 850
42D CORD 100 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 850
52D CORD 200 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 850
62D CORD 10 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm263.15Bruker AVANCE III 850
72D CORD 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm263.15Bruker AVANCE III 850
82D CORD 100 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm263.15Bruker AVANCE III 850
92D CORD 200 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm263.15Bruker AVANCE III 850
102D NCACX 50 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 850
112D NCACX 50 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm263.15Bruker AVANCE III 850
122D CORD 25 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 600
132D CORD 100 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 600
142D CORD 250 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 600
152D CORD 500 ms400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 600
162D direct INADEQUATE400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 600
172D PAIN CP400 uM [U-100% 13C; U-100% 15N] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM BVMProtein buffer250 mM81 atm277.15Bruker AVANCE III 600
182D CORD 50 ms400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm268.15Bruker AVANCE III 850
192D HC CP HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm277.15Bruker AVANCE III 850
202D doubleREDOR HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm277.15Bruker AVANCE III 850
212D hNH HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm277.15Bruker AVANCE III 850
222D hPH HETCOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm277.15Bruker AVANCE III 850
231D 31P direct polarization400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm277.15Bruker AVANCE III 850
241D 31P cross polarization400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm277.15Bruker AVANCE III 850
251D doubleREDOR400 uM [U-100% 13C; U-100% 15N; 99.9%-2H] HIV-1 CACTD-SP1, 400 uM IP6, 360 uM Bevirimatprotein buffer250 mM81 atm277.15Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III850
2BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number5
Representative Model1 (lowest energy)
Additional NMR Experimental Information
Detailsmagic angle spinning
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentNMRFAM-SPARKY3.115Lee, Tonelli and Markley
4chemical shift assignmentCcpNmr Analysis2.4CCPN
5data analysisNMRFAM-SPARKY3.115Lee, Tonelli and Markley
6structure calculationTALOS-NShen and Bax
7structure calculationX-PLOR NIH2.53Schwieters, Kuszewski, Tjandra and Clore
8refinementX-PLOR NIH2.53Schwieters, Kuszewski, Tjandra and Clore