7QYJ

The structure of T. forsythia NanH

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6	300	7% PEG6000 0.1M HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.44	49.65

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 80.055	α = 90
b = 80.055	β = 90
c = 349.751	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.97795	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.11	66.082	100	0.125	0.895	11.4	12.8		67026

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.11	2.15			2.359	0.61	1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4bbw	2.11	66.082	66825	3412	99.863	0.242	0.2401	0.2661	54.128

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.774			1.774		-3.549

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.336
r_dihedral_angle_4_deg	14.66
r_dihedral_angle_3_deg	13.616
r_dihedral_angle_1_deg	8.155
r_lrange_it	2.526
r_lrange_other	2.524
r_angle_refined_deg	1.434
r_mcangle_other	1.229
r_mcangle_it	1.228
r_scangle_it	1.196
r_scangle_other	1.196
r_angle_other_deg	1.194
r_mcbond_it	0.762
r_mcbond_other	0.761
r_scbond_it	0.738
r_scbond_other	0.738
r_nbd_refined	0.188
r_nbd_other	0.185
r_symmetry_nbd_refined	0.18
r_symmetry_nbd_other	0.179
r_nbtor_refined	0.15
r_xyhbond_nbd_refined	0.136
r_symmetry_xyhbond_nbd_refined	0.121
r_ncsr_local_group_1	0.077
r_symmetry_nbtor_other	0.072
r_chiral_restr	0.06
r_bond_refined_d	0.006
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8040
Nucleic Acid Atoms
Solvent Atoms	124
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing