7QY8

The structure of T. forsythia NanH

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6	300	7% PEG6000 0.1M HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.44	49.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 80.059	α = 90
b = 80.059	β = 90
c = 349.789	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.97795	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.06	72.901	100	0.158	0.999	14.8	25.6		71921

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.06	2.1			2.964	0.797	1.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4bbw	2.06	72.901	71564	3626	99.695	0.246	0.2448	0.2786	49.091

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.909			1.909		-3.818

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.526
r_dihedral_angle_4_deg	16.164
r_dihedral_angle_3_deg	13.597
r_dihedral_angle_1_deg	7.832
r_lrange_it	5.618
r_lrange_other	5.562
r_scangle_it	1.81
r_scangle_other	1.809
r_mcangle_it	1.546
r_mcangle_other	1.545
r_angle_refined_deg	1.306
r_angle_other_deg	1.125
r_scbond_it	1.115
r_scbond_other	1.115
r_mcbond_it	0.989
r_mcbond_other	0.989
r_nbd_refined	0.176
r_symmetry_nbd_other	0.174
r_nbd_other	0.162
r_nbtor_refined	0.145
r_xyhbond_nbd_refined	0.134
r_symmetry_xyhbond_nbd_refined	0.118
r_ncsr_local_group_1	0.083
r_symmetry_nbtor_other	0.069
r_chiral_restr	0.047
r_symmetry_xyhbond_nbd_other	0.044
r_symmetry_nbd_refined	0.038
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8019
Nucleic Acid Atoms
Solvent Atoms	325
Heterogen Atoms	86

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing