7QQH

Crystal structure of MYORG (D520N) in complex with Gal-a1,4-Glc

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7	291	100 mM HEPES 7.0, 10% PEG MME5000 and 5% tasimate pH7.0

Crystal Properties
Matthews coefficient	Solvent content
3.1	60.26

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 73.286	α = 80.909
b = 79.099	β = 79.112
c = 178.016	γ = 62.667

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2021-06-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.97627	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.25	64.53	98.2	0.073	0.103	0.073	0.99	7.9	3.1		161989

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.25	2.29			0.8	1.131	0.8	0.962	1	3.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2F2H	2.25	64.53	161977	8099	98.198	0.213	0.2122	0.2266	50.45

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.466	-0.418	2.387	0.442	-0.397	0.051

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	27.099
r_dihedral_angle_4_deg	18.618
r_dihedral_angle_3_deg	15.515
r_dihedral_angle_1_deg	7.042
r_lrange_it	3.255
r_lrange_other	3.235
r_dihedral_angle_other_1_deg	2.921
r_mcangle_it	1.357
r_mcangle_other	1.357
r_scangle_it	1.343
r_scangle_other	1.343
r_angle_refined_deg	1.311
r_angle_other_deg	1.111
r_mcbond_it	0.795
r_mcbond_other	0.795
r_scbond_it	0.787
r_scbond_other	0.787
r_nbd_other	0.197
r_nbd_refined	0.177
r_symmetry_nbd_other	0.173
r_nbtor_refined	0.162
r_symmetry_xyhbond_nbd_refined	0.145
r_xyhbond_nbd_refined	0.142
r_symmetry_nbd_refined	0.112
r_symmetry_xyhbond_nbd_other	0.106
r_symmetry_nbtor_other	0.071
r_chiral_restr	0.054
r_ncsr_local_group_1	0.054
r_ncsr_local_group_3	0.051
r_ncsr_local_group_5	0.051
r_ncsr_local_group_6	0.047
r_ncsr_local_group_2	0.046
r_ncsr_local_group_4	0.046
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	19783
Nucleic Acid Atoms
Solvent Atoms	486
Heterogen Atoms	520

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing