7QLL

rsKiiro Thermal annealing at 290K of 200K Cis intermediate


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE8.42930.2 M LITHIUM SULFATE 0.1 M TRIS-CL PH 8.5 23-30% PEG 3350,
Crystal Properties
Matthews coefficientSolvent content
2.2244.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.671α = 90
b = 73.803β = 90
c = 78.111γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2018-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.72932DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32453.70386.30.0870.0260.99915.715.744562
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.3361.40.4551.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5OQ91.32453.70344562226184.3020.1710.16950.197616.881
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.086-0.005-0.081
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.556
r_dihedral_angle_4_deg19.845
r_dihedral_angle_3_deg11.645
r_dihedral_angle_1_deg7.532
r_lrange_it5.617
r_lrange_other5.617
r_scangle_it4.19
r_scangle_other4.185
r_scbond_it2.753
r_scbond_other2.753
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.556
r_dihedral_angle_4_deg19.845
r_dihedral_angle_3_deg11.645
r_dihedral_angle_1_deg7.532
r_lrange_it5.617
r_lrange_other5.617
r_scangle_it4.19
r_scangle_other4.185
r_scbond_it2.753
r_scbond_other2.753
r_mcangle_it2.535
r_mcangle_other2.524
r_angle_refined_deg1.844
r_mcbond_it1.643
r_mcbond_other1.62
r_angle_other_deg1.507
r_symmetry_xyhbond_nbd_refined0.419
r_symmetry_nbd_refined0.268
r_nbd_refined0.261
r_nbd_other0.254
r_symmetry_nbd_other0.202
r_nbtor_refined0.177
r_xyhbond_nbd_refined0.163
r_chiral_restr0.093
r_symmetry_nbtor_other0.086
r_symmetry_xyhbond_nbd_other0.027
r_bond_refined_d0.013
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1762
Nucleic Acid Atoms
Solvent Atoms177
Heterogen Atoms11

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
STARANISOdata scaling
REFMACphasing