X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE2930.2 M LITHIUM SULFATE 0.1 M TRIS-CL PH 8.5 23-30% PEG 3350,
Crystal Properties
Matthews coefficientSolvent content
2.2244.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.56α = 90
b = 73.467β = 90
c = 78.038γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-12-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.7293DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.15553.549770.1220.1270.99912.113.259836
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.1591.2610.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5OQ91.15553.54959836288876.1680.1620.16090.178713.723
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0010.087-0.086
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.653
r_dihedral_angle_4_deg17.513
r_dihedral_angle_3_deg12.068
r_dihedral_angle_1_deg7.51
r_lrange_it4.953
r_lrange_other4.773
r_scangle_other3.537
r_scangle_it3.531
r_scbond_other2.349
r_scbond_it2.347
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.653
r_dihedral_angle_4_deg17.513
r_dihedral_angle_3_deg12.068
r_dihedral_angle_1_deg7.51
r_lrange_it4.953
r_lrange_other4.773
r_scangle_other3.537
r_scangle_it3.531
r_scbond_other2.349
r_scbond_it2.347
r_mcangle_other1.852
r_mcangle_it1.847
r_angle_refined_deg1.811
r_angle_other_deg1.527
r_mcbond_it1.187
r_mcbond_other1.174
r_nbd_refined0.287
r_symmetry_nbd_other0.207
r_xyhbond_nbd_refined0.195
r_nbd_other0.178
r_nbtor_refined0.176
r_symmetry_xyhbond_nbd_refined0.113
r_chiral_restr0.096
r_symmetry_nbtor_other0.087
r_symmetry_xyhbond_nbd_other0.087
r_symmetry_nbd_refined0.071
r_bond_refined_d0.013
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1747
Nucleic Acid Atoms
Solvent Atoms232
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
STARANISOdata scaling
REFMACphasing