7QCQ

VHH Z70 in interaction with PHF6 Tau peptide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.42930.17 M ammonium sulfate, 25.5% PEG 4000, 15% glycerol
Crystal Properties
Matthews coefficientSolvent content
3.2662.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 135.469α = 90
b = 135.469β = 90
c = 35.579γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80PIXELDECTRIS EIGER X 16M2021-07-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 10.9801SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.744.3821000.2020.2070.0450.9991639.521730
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.739.83310.072.1660.77740.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1ol01.744.38221711108699.9860.1960.19540.214229.768
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.8950.4480.895-2.905
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.672
r_dihedral_angle_4_deg18.567
r_dihedral_angle_3_deg12.954
r_lrange_it8.379
r_lrange_other8.319
r_dihedral_angle_1_deg6.902
r_scangle_it6.201
r_scangle_other6.201
r_mcangle_it4.616
r_mcangle_other4.613
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.672
r_dihedral_angle_4_deg18.567
r_dihedral_angle_3_deg12.954
r_lrange_it8.379
r_lrange_other8.319
r_dihedral_angle_1_deg6.902
r_scangle_it6.201
r_scangle_other6.201
r_mcangle_it4.616
r_mcangle_other4.613
r_scbond_it4.186
r_scbond_other4.182
r_mcbond_it3.024
r_mcbond_other2.987
r_angle_refined_deg1.841
r_angle_other_deg1.467
r_nbd_refined0.21
r_nbd_other0.2
r_symmetry_nbd_other0.187
r_xyhbond_nbd_refined0.185
r_nbtor_refined0.179
r_symmetry_xyhbond_nbd_refined0.171
r_symmetry_nbtor_other0.087
r_chiral_restr0.076
r_symmetry_nbd_refined0.07
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms912
Nucleic Acid Atoms
Solvent Atoms109
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
MOLREPphasing