7Q4S

Structure of the Pseudomonas aeruginosa bacteriophage JG004 endolysin Pae87, apo form.

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	9.5	294	20% (w/v) PEG 8000, 0.1 M CHES-NaOH, 20 mM Tris-HCl

Crystal Properties
Matthews coefficient	Solvent content
2.04	39.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 59.247	α = 90
b = 68.085	β = 90
c = 93.1	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-12-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.5	59.25	99.7	0.183	0.202	0.083	0.991	6	5.7		13640			31.796

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.5	2.6	99.1		0.99	1.087	0.444	0.86	2.1	5.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5NM7	2.5	55.018	13599	658	99.743	0.225	0.2222	0.2779	56.402

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-3.567			-2.533		6.1

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.684
r_dihedral_angle_4_deg	17.027
r_dihedral_angle_3_deg	11.734
r_dihedral_angle_1_deg	4.813
r_lrange_it	4.214
r_lrange_other	4.214
r_mcangle_it	2.011
r_mcangle_other	2.011
r_scangle_it	1.533
r_scangle_other	1.533
r_mcbond_it	1.129
r_mcbond_other	1.127
r_angle_refined_deg	1.121
r_angle_other_deg	1.037
r_scbond_it	0.825
r_scbond_other	0.825
r_nbd_refined	0.158
r_nbtor_refined	0.152
r_symmetry_xyhbond_nbd_refined	0.15
r_symmetry_nbd_other	0.147
r_xyhbond_nbd_refined	0.121
r_symmetry_nbd_refined	0.113
r_nbd_other	0.112
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.033
r_chiral_restr_other	0.028
r_bond_refined_d	0.002
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2964
Nucleic Acid Atoms
Solvent Atoms	99
Heterogen Atoms	39

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
MOLREP	phasing