7POX

TNKS2 in complex with OM-1700, treated with H2O2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP297.15PEG6000, Bicine, pH = 8.5
Crystal Properties
Matthews coefficientSolvent content
2.3748.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.64α = 90
b = 76.44β = 90
c = 147.79γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2020-07-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97625DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55099.30.99810.6413.316930
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.560.899

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.541.4431693084799.3310.250.24790.280255.804
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.4447.655-7.211
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.957
r_dihedral_angle_3_deg12.06
r_dihedral_angle_4_deg9.4
r_dihedral_angle_1_deg6.318
r_lrange_it5.048
r_lrange_other5.048
r_mcangle_it3.526
r_mcangle_other3.525
r_scangle_it2.578
r_scangle_other2.577
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.957
r_dihedral_angle_3_deg12.06
r_dihedral_angle_4_deg9.4
r_dihedral_angle_1_deg6.318
r_lrange_it5.048
r_lrange_other5.048
r_mcangle_it3.526
r_mcangle_other3.525
r_scangle_it2.578
r_scangle_other2.577
r_mcbond_it1.951
r_mcbond_other1.948
r_scbond_it1.389
r_scbond_other1.389
r_angle_refined_deg1.165
r_angle_other_deg1.055
r_symmetry_nbd_other0.175
r_nbd_refined0.161
r_nbtor_refined0.16
r_nbd_other0.152
r_xyhbond_nbd_refined0.135
r_symmetry_nbd_refined0.132
r_symmetry_xyhbond_nbd_refined0.095
r_symmetry_nbtor_other0.07
r_symmetry_xyhbond_nbd_other0.049
r_chiral_restr0.035
r_gen_planes_refined0.003
r_bond_refined_d0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3075
Nucleic Acid Atoms
Solvent Atoms32
Heterogen Atoms68

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing