7PA8

JC polyomavirus VP1 in complex with Fab 27C2

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277.15	0.1 M Ammonium citrate tribasic pH 7.0, 12% (w/v) PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.38	63.64

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 137.07	α = 90
b = 110.44	β = 93.115
c = 158.21	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	93	PIXEL	DECTRIS PILATUS 2M-F		2016-02-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	0.99	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.15	49.007	99.6	0.32	0.98	9.49	7.03		81593

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.15	3.34			1.05	0.53	1.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3NXG, 5BVJ	3.15	49.007	81570	4079	99.682	0.213	0.212	0.2407	45.462

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
6.326		0.325	-2.023		-4.313

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.411
r_dihedral_angle_4_deg	17.891
r_dihedral_angle_3_deg	15.348
r_lrange_it	11.549
r_lrange_other	11.549
r_dihedral_angle_1_deg	7.859
r_mcangle_it	7.403
r_mcangle_other	7.403
r_scangle_it	7.285
r_scangle_other	7.285
r_mcbond_it	4.689
r_mcbond_other	4.689
r_scbond_it	4.628
r_scbond_other	4.628
r_angle_other_deg	2.444
r_angle_refined_deg	1.604
r_nbd_other	0.293
r_symmetry_nbd_refined	0.273
r_symmetry_nbd_other	0.224
r_nbd_refined	0.207
r_symmetry_xyhbond_nbd_refined	0.204
r_nbtor_refined	0.168
r_xyhbond_nbd_refined	0.154
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.069
r_symmetry_xyhbond_nbd_other	0.05
r_bond_other_d	0.037
r_bond_refined_d	0.009
r_gen_planes_other	0.008
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	21270
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing