7P5S

NMR structure of a peptide deriving from SARS-CoV-2 Lineages P.1 and B.1.351 S RBD 482-506 fragment in HFIP/H2O


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY2.5 mM SMIMIC-bg, 50 % v/v Hexafluoroisopropanol, 40 % v/v H2O, 10 % v/v [U-100% 2H] D2O50% hexafluoroisopropanol/40% H2O/10% D2O02.51 atm298Bruker AVANCE II 500
22D 1H-1H NOESY2.5 mM SMIMIC-bg, 50 % v/v Hexafluoroisopropanol, 40 % v/v H2O, 10 % v/v [U-100% 2H] D2O50% hexafluoroisopropanol/40% H2O/10% D2O02.51 atm298Bruker AVANCE II 500
32D 1H-13C HSQC2.5 mM SMIMIC-bg, 50 % v/v Hexafluoroisopropanol, 40 % v/v H2O, 10 % v/v [U-100% 2H] D2O50% hexafluoroisopropanol/40% H2O/10% D2O02.51 atm298Bruker AVANCE II 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsTALOS-N
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number35
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentNMRFAM-SPARKYLee
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3refinementTALOS-NBax
4peak pickingNMRFAM-SPARKYLee