X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP92930.1 M bicine (pH 9.0) and 20% (w/v) PEG 6000
Crystal Properties
Matthews coefficientSolvent content
2.5752.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.986α = 90
b = 47.283β = 90
c = 115.588γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-05-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.946444MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.547.2899.80.0610.99919.212.336807
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.530.3610.986

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4MAH1.529.88636738195999.6770.1490.14640.197428.943
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.348-1.644-2.703
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.373
r_dihedral_angle_4_deg24.047
r_dihedral_angle_3_deg12.359
r_dihedral_angle_1_deg7.248
r_scangle_it5.6
r_scangle_other5.597
r_lrange_it5.124
r_scbond_it5.1
r_scbond_other5.097
r_lrange_other4.989
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.373
r_dihedral_angle_4_deg24.047
r_dihedral_angle_3_deg12.359
r_dihedral_angle_1_deg7.248
r_scangle_it5.6
r_scangle_other5.597
r_lrange_it5.124
r_scbond_it5.1
r_scbond_other5.097
r_lrange_other4.989
r_rigid_bond_restr4.277
r_mcangle_other3.577
r_mcangle_it3.516
r_mcbond_it3.4
r_mcbond_other3.22
r_angle_refined_deg1.827
r_angle_other_deg1.489
r_nbd_refined0.256
r_symmetry_nbd_other0.23
r_nbd_other0.189
r_nbtor_refined0.184
r_symmetry_nbd_refined0.143
r_xyhbond_nbd_refined0.131
r_symmetry_nbtor_other0.117
r_chiral_restr0.095
r_symmetry_xyhbond_nbd_refined0.083
r_bond_refined_d0.014
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1527
Nucleic Acid Atoms
Solvent Atoms182
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing