7NEE

Inhibitor Complex with Thrombin Activatable Fibrinolysis inhibitor (TAFIa)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.529323% PEG 8000, 200mM Ammonium Citrate, 100 mM MES
Crystal Properties
Matthews coefficientSolvent content
2.6253.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.17α = 90
b = 95.5β = 90
c = 157.22γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42011-12-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B1.03324APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5537.38496.29.5315499
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.552.66

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEin house model2.5537.3841545977395.6270.2570.25430.315639.852
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.824-9.2284.404
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.233
r_dihedral_angle_4_deg21.503
r_dihedral_angle_3_deg20.003
r_dihedral_angle_1_deg8.755
r_lrange_it4.053
r_lrange_other4.053
r_mcangle_it2.492
r_mcangle_other2.491
r_scangle_it2.333
r_scangle_other2.332
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.233
r_dihedral_angle_4_deg21.503
r_dihedral_angle_3_deg20.003
r_dihedral_angle_1_deg8.755
r_lrange_it4.053
r_lrange_other4.053
r_mcangle_it2.492
r_mcangle_other2.491
r_scangle_it2.333
r_scangle_other2.332
r_angle_refined_deg1.86
r_mcbond_it1.481
r_mcbond_other1.481
r_scbond_it1.365
r_scbond_other1.361
r_angle_other_deg1.263
r_metal_ion_refined0.253
r_nbd_refined0.223
r_symmetry_nbd_other0.204
r_nbtor_refined0.183
r_xyhbond_nbd_refined0.18
r_nbd_other0.166
r_symmetry_xyhbond_nbd_other0.094
r_symmetry_nbtor_other0.085
r_chiral_restr0.075
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3136
Nucleic Acid Atoms
Solvent Atoms20
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing