7K58

Structure of outer-arm dyneins bound to microtubule with microtubule binding state 1(MTBS-1)


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.41
r_long_range_B_refined27.928
r_long_range_B_other27.928
r_scangle_other18.888
r_mcangle_it18.476
r_mcangle_other18.476
r_dihedral_angle_3_deg14.905
r_dihedral_angle_4_deg12.217
r_mcbond_it11.355
r_mcbond_other11.355
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.41
r_long_range_B_refined27.928
r_long_range_B_other27.928
r_scangle_other18.888
r_mcangle_it18.476
r_mcangle_other18.476
r_dihedral_angle_3_deg14.905
r_dihedral_angle_4_deg12.217
r_mcbond_it11.355
r_mcbond_other11.355
r_scbond_it10.708
r_scbond_other10.708
r_dihedral_angle_1_deg6.191
r_angle_refined_deg1.346
r_angle_other_deg1.08
r_chiral_restr0.047
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Outer-arm dynein
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles191776
Reported Resolution (Å)4
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 QUANTUM (4k x 4k)
Electron Dose (electrons/Å**2)53.3
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE