Experiment: 7EZL

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293	0.1M bis-tris pH 6.5, 0.2M MgCl2, 25% poly- ethylene glycol 3350

Crystal Properties
Matthews coefficient	Solvent content
2.09	41.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 47.838	α = 90
b = 55.17	β = 101.529
c = 56.911	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	95	CCD	ADSC QUANTUM 210		2012-04-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE AR-NW12A	1.0000	Photon Factory	AR-NW12A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	50	99.6	0.104	35.3	7		27173

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.83			0.878	2.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	7EZI	1.8	32.797	26974	1359	99.587	0.211	0.2089	0.2573	37.347

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.171		0.367	0.212		-0.176

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.436
r_dihedral_angle_4_deg	21.684
r_dihedral_angle_3_deg	15.845
r_lrange_it	7.787
r_dihedral_angle_1_deg	6.376
r_scangle_it	5.782
r_mcangle_it	4.459
r_scbond_it	3.847
r_mcbond_it	3.116
r_angle_refined_deg	1.513

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.436
r_dihedral_angle_4_deg	21.684
r_dihedral_angle_3_deg	15.845
r_lrange_it	7.787
r_dihedral_angle_1_deg	6.376
r_scangle_it	5.782
r_mcangle_it	4.459
r_scbond_it	3.847
r_mcbond_it	3.116
r_angle_refined_deg	1.513
r_nbtor_refined	0.309
r_nbd_refined	0.221
r_symmetry_nbd_refined	0.172
r_symmetry_xyhbond_nbd_refined	0.165
r_xyhbond_nbd_refined	0.158
r_chiral_restr	0.108
r_gen_planes_refined	0.009
r_bond_refined_d	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2425
Nucleic Acid Atoms
Solvent Atoms	89
Heterogen Atoms	45

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
MOLREP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.