7C25

Glycosidase Wild Type at pH8.0

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8	293	0.2 M Ammonium citrate (pH8.0), 8% PEG monomethyl ether 2000

Crystal Properties
Matthews coefficient	Solvent content
3.1	60.29

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 105.462	α = 90
b = 105.462	β = 90
c = 89.952	γ = 90

Symmetry
Space Group	P 4 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 2M		2019-12-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE AR-NW12A	1.0	Photon Factory	AR-NW12A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	47.21	92.6	0.076	0.077	1	0.265	26.1		74640

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.6	99.7		1.329	1.357	0.855	0.028	24.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5Z3A	1.505	47.209	74640	3721	92.577	0.138	0.1362	0.1726	22.889

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.171			-0.171		0.341

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.035
r_dihedral_angle_4_deg	20.778
r_dihedral_angle_3_deg	11.564
r_dihedral_angle_1_deg	5.695
r_rigid_bond_restr	4.212
r_scangle_it	4.086
r_scangle_other	4.085
r_lrange_it	4.044
r_lrange_other	3.753
r_scbond_it	3.68
r_scbond_other	3.68
r_mcangle_it	2.897
r_mcangle_other	2.897
r_mcbond_it	2.717
r_mcbond_other	2.704
r_angle_refined_deg	1.947
r_angle_other_deg	1.744
r_chiral_restr_other	0.556
r_symmetry_nbd_refined	0.368
r_nbd_other	0.24
r_nbd_refined	0.228
r_symmetry_nbd_other	0.184
r_nbtor_refined	0.181
r_symmetry_xyhbond_nbd_refined	0.18
r_xyhbond_nbd_refined	0.162
r_chiral_restr	0.125
r_symmetry_nbtor_other	0.085
r_bond_refined_d	0.016
r_gen_planes_refined	0.014
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2864
Nucleic Acid Atoms
Solvent Atoms	415
Heterogen Atoms	38

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing