7B9Z

Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 35-(E)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29318% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammoniumthiocyanat
Crystal Properties
Matthews coefficientSolvent content
2.4650.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.039α = 90
b = 49.634β = 90
c = 71.2γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2020-11-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)0.976260PETRA III, EMBL c/o DESYP13 (MX1)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4471.297.90.0430.0470.018122.21325151
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.441.461.6081.7370.6530.80713.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4tw71.4435.00225108121897.5860.1410.13970.166330.723
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.855-1.1720.317
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.086
r_dihedral_angle_3_deg13.91
r_rigid_bond_restr13.846
r_dihedral_angle_4_deg9.261
r_dihedral_angle_1_deg8.019
r_scbond_it7.28
r_scbond_other7.274
r_lrange_it7.034
r_lrange_other7.009
r_scangle_other6.803
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.086
r_dihedral_angle_3_deg13.91
r_rigid_bond_restr13.846
r_dihedral_angle_4_deg9.261
r_dihedral_angle_1_deg8.019
r_scbond_it7.28
r_scbond_other7.274
r_lrange_it7.034
r_lrange_other7.009
r_scangle_other6.803
r_scangle_it6.802
r_mcbond_it6.583
r_mcbond_other6.577
r_mcangle_it6.055
r_mcangle_other6.051
r_angle_refined_deg2.19
r_angle_other_deg1.691
r_chiral_restr_other1.606
r_nbd_other0.242
r_symmetry_nbd_refined0.237
r_symmetry_nbd_other0.201
r_nbd_refined0.199
r_symmetry_xyhbond_nbd_refined0.181
r_nbtor_refined0.177
r_xyhbond_nbd_refined0.171
r_chiral_restr0.113
r_symmetry_nbtor_other0.088
r_bond_refined_d0.021
r_gen_planes_refined0.014
r_bond_other_d0.006
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms966
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms62

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
Aimlessdata reduction
XDSdata collection
Aimlessdata scaling
PHASERphasing