7ATO

Structure of P. aeruginosa PBP3 in complex with an aryl boronic acid (Compound 2)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	293	25% (w/v) polyethylene glycol 3 350, 0.1 M Bis-Tris propane pH 8 and 1% (w/v) protamine sulphate

Crystal Properties
Matthews coefficient	Solvent content
2.12	41.96

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 68.25	α = 90
b = 83.158	β = 90
c = 90.115	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M	Mirrors	2018-07-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.97934	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.587	61.113	95.5	0.059	0.024	0.999	15.8	7.4		53748

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.587	1.706	65.4		1.329	0.512	0.599		7.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6HZR	1.587	61.113	53748	2603	76.782	0.154	0.1498	0.2343	41.788

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.566			2.039		0.527

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.189
r_dihedral_angle_4_deg	17.971
r_dihedral_angle_3_deg	15.57
r_lrange_it	11.587
r_lrange_other	11.572
r_scangle_it	11.564
r_scangle_other	11.563
r_scbond_it	9.559
r_scbond_other	9.558
r_mcangle_it	9.135
r_mcangle_other	9.135
r_mcbond_it	8.024
r_mcbond_other	8.022
r_dihedral_angle_1_deg	7.207
r_rigid_bond_restr	4.848
r_angle_refined_deg	1.748
r_angle_other_deg	1.382
r_nbd_other	0.216
r_nbd_refined	0.211
r_symmetry_nbd_other	0.195
r_symmetry_xyhbond_nbd_refined	0.182
r_nbtor_refined	0.164
r_xyhbond_nbd_refined	0.157
r_symmetry_nbd_refined	0.135
r_symmetry_xyhbond_nbd_other	0.089
r_chiral_restr	0.084
r_symmetry_nbtor_other	0.083
r_bond_refined_d	0.012
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3839
Nucleic Acid Atoms
Solvent Atoms	246
Heterogen Atoms	21

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
STARANISO	data processing
PHASER	phasing
PDB_EXTRACT	data extraction