7ATK

Crystal structure of UipA in complex with Uranium

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	MES pH6 100mM, PEG6K 22%, Formamide 6%, ZnCl2 5-15mM

Crystal Properties
Matthews coefficient	Solvent content
2.78	55.74

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 95.16	α = 90
b = 95.16	β = 90
c = 52.51	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2019-09-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 1	1.3051	SOLEIL	PROXIMA 1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.85	47	99.6	0.99	12.2	14		10684

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.85	3.03			0.76

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7ATH	2.855	47	5956	298	99.649	0.208	0.207	0.234	80.529

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.794			-2.794		5.588

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	50.078
r_dihedral_angle_4_deg	20.546
r_dihedral_angle_3_deg	20.47
r_lrange_it	16.555
r_lrange_other	16.547
r_scangle_it	14.273
r_scangle_other	14.262
r_mcangle_other	10.598
r_mcangle_it	10.585
r_scbond_it	9.552
r_scbond_other	9.546
r_dihedral_angle_1_deg	9.082
r_mcbond_it	7.121
r_mcbond_other	7.069
r_angle_refined_deg	1.782
r_angle_other_deg	1.286
r_symmetry_xyhbond_nbd_refined	0.334
r_nbd_refined	0.23
r_xyhbond_nbd_refined	0.223
r_symmetry_nbd_refined	0.192
r_symmetry_nbd_other	0.185
r_nbd_other	0.179
r_nbtor_refined	0.152
r_metal_ion_refined	0.142
r_xyhbond_nbd_other	0.125
r_symmetry_nbtor_other	0.085
r_chiral_restr	0.076
r_symmetry_xyhbond_nbd_other	0.026
r_bond_refined_d	0.008
r_gen_planes_refined	0.006
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	962
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	9

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing