7ALY

The crystal structure of gene product PA4063 from Pseudomonas aeruginosa in complex with Au(I) for phasing

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		298	ammonium sulfate 2.5-3M, MPD 1%

Crystal Properties
Matthews coefficient	Solvent content
3.82	67.78

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 122.632	α = 90
b = 122.632	β = 90
c = 102.644	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2019-11-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.7	47.16	93.7	0.083	0.09	0.035	0.999	23.1	12.6		22698

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.7	2.83			1.383	1.502	0.582	0.767		13

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	2.7	46.252	22658	1086	93.713	0.196	0.1943	0.2371	74.927

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.244	0.622		1.244		-4.036

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.087
r_dihedral_angle_3_deg	18.058
r_lrange_other	15.39
r_lrange_it	15.388
r_scangle_it	12.918
r_scangle_other	12.899
r_dihedral_angle_4_deg	12.449
r_mcangle_other	9.658
r_mcangle_it	9.656
r_scbond_it	8.601
r_scbond_other	8.599
r_dihedral_angle_1_deg	7.157
r_mcbond_it	6.927
r_mcbond_other	6.889
r_angle_refined_deg	1.632
r_angle_other_deg	1.222
r_symmetry_nbd_refined	0.237
r_nbd_refined	0.219
r_symmetry_xyhbond_nbd_refined	0.219
r_nbd_other	0.213
r_symmetry_nbd_other	0.174
r_xyhbond_nbd_refined	0.154
r_nbtor_refined	0.153
r_ncsr_local_group_2	0.129
r_ncsr_local_group_1	0.128
r_ncsr_local_group_3	0.112
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.07
r_bond_refined_d	0.011
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3045
Nucleic Acid Atoms
Solvent Atoms	14
Heterogen Atoms	1

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data reduction
XDS	data processing
XDS	data scaling
AutoSol	phasing