7AC0

Epoxide hydrolase CorEH without ligand


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52932 uL reservoir (16% PEG4000, 0.1 M Tris pH 9.5, 0.1 M NaOAc, 0.018 M imidazol pH 7.0) + 2 uL protein solution (10 mg/ml protein, 10 mM Tris pH 7.5, 20 mM NaCl) + 0.66 uL extra (1 M imidazol pH 6.5)
Crystal Properties
Matthews coefficientSolvent content
2.3146.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 140.016α = 90
b = 156.57β = 90
c = 112.581γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2Mmirrors2020-03-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.20.918400BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1775099.70.2030.220.9949.16.7129462-3-337.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.1772.3198.91.411.5350.5471.36.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3QYJ2.17747.394129462641599.6670.1760.17340.2262random selection34.511
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.7680.190.578
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.12
r_dihedral_angle_4_deg24.222
r_dihedral_angle_3_deg15.343
r_dihedral_angle_1_deg7.304
r_lrange_it4.003
r_lrange_other3.934
r_scangle_it1.837
r_scangle_other1.837
r_angle_refined_deg1.759
r_mcangle_it1.583
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.12
r_dihedral_angle_4_deg24.222
r_dihedral_angle_3_deg15.343
r_dihedral_angle_1_deg7.304
r_lrange_it4.003
r_lrange_other3.934
r_scangle_it1.837
r_scangle_other1.837
r_angle_refined_deg1.759
r_mcangle_it1.583
r_mcangle_other1.583
r_angle_other_deg1.36
r_scbond_it1.149
r_scbond_other1.149
r_mcbond_it1.022
r_mcbond_other1.022
r_symmetry_xyhbond_nbd_other0.255
r_nbd_refined0.212
r_nbd_other0.205
r_symmetry_nbd_other0.177
r_nbtor_refined0.176
r_xyhbond_nbd_refined0.161
r_symmetry_xyhbond_nbd_refined0.154
r_symmetry_nbd_refined0.123
r_chiral_restr0.088
r_symmetry_nbtor_other0.077
r_bond_refined_d0.012
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18055
Nucleic Acid Atoms
Solvent Atoms1112
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing