7AAF

Structural evolution of the tissue-specific U2AF2 paralog and alternative splicing factor LS2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 800 800
22D 1H-13C HSQC aliphatic0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 800 800
32D 1H-13C HSQC aromatic0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 800 800
43D HNCACB0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 750 750
53D HNCA0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 750 750
83D 1H-15N NOESY0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 900 900
63D 1H-13C NOESY aliphatic0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 800 800
93D 1H-13C NOESY aromatic0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT90% H2O/10% D2O0.07 mM6.51 atm298Bruker AVANCE 800 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE 750750
2BrukerAVANCE 800800
3BrukerAVANCE 900900
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number40
Conformers Submitted Total Number10
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger A. T. et.al.
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3chemical shift assignmentSparkyGoddard
4peak pickingSparkyGoddard