7A6W

Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 33-(Z)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529324% PEG-3350, 0.2 M NH4-acetate, 0.1 M HEPES-NaOH pH 7.5
Crystal Properties
Matthews coefficientSolvent content
1.9637.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.797α = 90
b = 47.869β = 90
c = 61.981γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2019-06-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.532.2796.10.1750.2470.1730.98133.134142
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.531.7272.431.7080.2332.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4tw71.8532.271847091196.8030.1870.18270.267116.591
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.848-0.953-4.62-1.228
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.747
r_dihedral_angle_3_deg14.725
r_dihedral_angle_4_deg14.306
r_dihedral_angle_1_deg7.919
r_lrange_it2.542
r_lrange_other2.541
r_mcangle_other2.224
r_mcangle_it2.223
r_scangle_it1.899
r_scangle_other1.898
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.747
r_dihedral_angle_3_deg14.725
r_dihedral_angle_4_deg14.306
r_dihedral_angle_1_deg7.919
r_lrange_it2.542
r_lrange_other2.541
r_mcangle_other2.224
r_mcangle_it2.223
r_scangle_it1.899
r_scangle_other1.898
r_mcbond_it1.749
r_mcbond_other1.743
r_angle_refined_deg1.645
r_rigid_bond_restr1.527
r_scbond_it1.512
r_scbond_other1.512
r_angle_other_deg1.27
r_chiral_restr_other1.069
r_symmetry_xyhbond_nbd_refined0.223
r_symmetry_nbd_other0.187
r_nbd_refined0.186
r_nbd_other0.168
r_nbtor_refined0.161
r_xyhbond_nbd_refined0.152
r_symmetry_nbd_refined0.137
r_symmetry_nbtor_other0.088
r_chiral_restr0.051
r_symmetry_xyhbond_nbd_other0.018
r_bond_refined_d0.009
r_bond_other_d0.005
r_gen_planes_refined0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1878
Nucleic Acid Atoms
Solvent Atoms42
Heterogen Atoms112

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata collection
Aimlessdata reduction
Aimlessdata scaling
PHASERphasing